Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| COAD | rs11752256 | chr6:128841382 | G/A | 6.01E-6 | 258 | 19.3 | 15.1 | 5.73 | KM Plot |
| COAD | rs12253520 | chr10:135235321 | C/A | 1.83E-5 | 257 | 19.52 | 16.47 | 13.75 | KM Plot |
| COAD | rs12369066 | chr12:51548861 | A/G | 1.74E-5 | 263 | 18.5 | 17.53 | 7.87 | KM Plot |
| COAD | rs12372440 | chr12:51549011 | G/A | 1.74E-5 | 263 | 18.5 | 17.53 | 7.87 | KM Plot |
| COAD | rs12521083 | chr5:56140727 | A/G | 1.14E-6 | 264 | 18.9 | 15.23 | 5.2 | KM Plot |
| COAD | rs139650028 | chr9:7319872 | T/TA | 0 | 262 | 17.53 | 23.9 | 1.43 | KM Plot |
| COAD | rs141126023 | chr22:50545688 | A/G | 5.28E-14 | 264 | 17.37 | 19.52 | 3.07 | KM Plot |
| COAD | rs141303996 | chr9:135145260 | C/T | 0 | 262 | 18 | 23.1 | 0 | KM Plot |
| COAD | rs143305502 | chr9:116039235 | C/A | 1.44E-5 | 263 | 18.07 | 17.17 | 3.63 | KM Plot |
| COAD | rs146946455 | chr22:50545734 | A/G | 5.28E-14 | 264 | 17.37 | 19.52 | 3.07 | KM Plot |
| COAD | rs148615930 | chr6:128844416 | AG/A | 3.26E-13 | 257 | 18.1 | 15.8 | 5.3 | KM Plot |
| COAD | rs1495230 | chr8:34025349 | C/T | 2.36E-5 | 265 | 18.1 | 14.7 | 0 | KM Plot |
| COAD | rs151288592 | chr16:31319756 | G/A | 1.19E-7 | 257 | 18.08 | 23.52 | 6.87 | KM Plot |
| COAD | rs16855090 | chr1:231957059 | C/T | 3.11E-5 | 265 | 20.4 | 11.38 | 1.68 | KM Plot |
| COAD | rs16872837 | chr4:10748381 | A/G | 0 | 264 | 19.5 | 14.97 | 0 | KM Plot |